Working with btrfs and common troubleshooting
btrfs is a copy-on-write filesystem with full support in the upstream Linux kernel and several desirable features. In the past, Flatcar Container Linux shipped with a btrfs root filesystem to support Docker filesystem requirements at the time. As of version 561.0.0, Flatcar Container Linux ships with ext4 as the default root filesystem by default while still supporting Docker. Btrfs is still supported and works with the latest Flatcar Container Linux releases and Docker, but we recommend using ext4.
btrfs was marked as experimental for a long time, but it’s now fully production-ready and supported by a number of Linux distributions.
Notable Features of btrfs:
- Ability to add/remove block devices without interruption
- Ability to balance the filesystem without interruption
- RAID 0, RAID 1, RAID 5, RAID 6 and RAID 10
- Snapshots and file cloning
This guide won’t cover these topics — it’s mostly focused on troubleshooting.
For a more complete troubleshooting experience, let’s explore how btrfs works under the hood.
btrfs stores data in chunks across all of the block devices on the system. The total storage across these devices is shown in the standard output of
Raw data and filesystem metadata are stored in one or many chunks, typically ~1GiB in size. When RAID is configured, these chunks are replicated instead of individual files.
A copy-on-write filesystem maintains many changes of a single file, which is helpful for snapshotting and other advanced features, but can lead to fragmentation with some workloads.
No space left on device
When the filesystem is out of chunks to write data into,
No space left on device will be reported. This will prevent journal files from being recorded, containers from starting and so on.
The common reaction to this error is to run
df -h and you’ll see that there is still some free space. That command isn’t measuring the btrfs primitives (chunks, metadata, etc), which is what really matters.
sudo btrfs fi show will give you the btrfs view of how much free space you have. When starting/stopping many Docker containers or doing a large amount of random writes, chunks will become duplicated in an inefficient manner over time.
Re-balancing the filesystem ( official btrfs docs ) will relocate data from empty or near-empty chunks to free up space. This operation can be done without downtime.
First, let’s see how much free space we have:
$ sudo btrfs fi show Label: 'ROOT' uuid: 82a40c46-557e-4848-ad4d-10c6e36ed5ad Total devices 1 FS bytes used 13.44GiB devid 1 size 32.68GiB used 32.68GiB path /dev/xvda9 Btrfs v3.14_pre20140414
The answer: not a lot. We can re-balance to fix that.
The re-balance command can be configured to only relocate data in chunks up to a certain percentage used. This will prevent you from moving around a lot of data without a lot of benefit. If your disk is completely full, you may need to delete a few containers to create space for the re-balance operation to work with.
Let’s try to relocate chunks with less than 5% of usage:
$ sudo btrfs fi balance start -dusage=5 / Done, had to relocate 5 out of 45 chunks $ sudo btrfs fi show Label: 'ROOT' uuid: 82a40c46-557e-4848-ad4d-10c6e36ed5ad Total devices 1 FS bytes used 13.39GiB devid 1 size 32.68GiB used 28.93GiB path /dev/xvda9 Btrfs v3.14_pre20140414
The operation took about a minute on a cloud server and gained us 4GiB of space on the filesystem. It’s up to you to find out what percentage works best for your workload, the speed of your disks, etc.
If your balance operation is taking a long time, you can open a new shell and find the status:
$ sudo btrfs balance status / Balance on '/' is running 0 out of about 1 chunks balanced (1 considered), 100% left
Adding a new physical disk
New physical disks can be added to an existing btrfs filesystem. The first step is to have the new block device mounted on the machine . Afterwards, let btrfs know about the new device and re-balance the file system. The key step here is re-balancing, which will move the data and metadata across both block devices. Expect this process to take some time:
btrfs device add /dev/sdc / btrfs filesystem balance /
Copy-On-write isn’t ideal for workloads that create or modify many small files, such as databases. Without disabling COW, you can heavily fragment the file system as explained above.
The best strategy for successfully running a database in a container is to disable COW on directory/volume that is mounted into the container.
The COW setting is stored as a file attribute and is modified with a utility called
chattr. To disable COW for a MySQL container’s volume, run:
sudo mkdir /var/lib/mysql sudo chattr -R +C /var/lib/mysql
/var/lib/mysql is now ready to be used by a Docker container without COW. Let’s break down the command:
-R indicates that want to recursively change the file attribute
+C means we want to set the NOCOW attribute on the file/directory
To verify, we can run:
$ sudo lsattr /var/lib/ ---------------- /var/lib/portage ---------------- /var/lib/gentoo ---------------- /var/lib/iptables ---------------- /var/lib/ip6tables ---------------- /var/lib/arpd ---------------- /var/lib/ipset ---------------- /var/lib/dbus ---------------- /var/lib/systemd ---------------- /var/lib/polkit-1 ---------------- /var/lib/dhcpcd ---------------- /var/lib/ntp ---------------- /var/lib/nfs ---------------- /var/lib/etcd ---------------- /var/lib/docker ---------------- /var/lib/update_engine ---------------C /var/lib/mysql
Disable via a unit file
Setting the file attributes can be done via a systemd unit using two
ExecStartPre=/usr/bin/mkdir -p /var/lib/mysql ExecStartPre=/usr/bin/chattr -R +C /var/lib/mysql